Sucrose (Vacuum Structure) |
PIMM88-Structures, Conformers S1 (left), S2 (right), and S3 (rightmost
model in the "sucr_sld" picture only)
Image Notes |
mep1,2 |
Molecular electrostatic potential profile (MEP, red: positive, violet: negative potentials), AM1 atomic charges |
mlp1,2 |
Molecular lipophilicity pattern (MLP, yellow-brown: hydrophobic, blue: hydrophilic areas) |
iso |
Iso-energy contour surfaces for the interaction with an negatively charged probe sphere at the +2 (red), +3 (yellow), +4 (green), +5 (blue), and +6 kcal/mol (pink) level relative to the global energy minimum |
cut1,2 |
Iso-potential cuts of the molecular surface sliced along constant potentials to identify the hydrogen bond donor (AH) unit (MEP > +18.0 kcal/mol, red), the H-bond acceptor (B) portion (MEP < -8.0 kcal/mol, blue or green), and the hydrophobic binding region X (yellow-brown, MLP > -0.042) as the AH-B-X-system of sweetness. |
For details see:
Molecular Modeling of Saccharides, Part VII.
The Conformation of Sucrose in Water: a Molecular Dynamics Approach.
S. Immel and F. W. Lichtenthaler, Liebigs Ann. Chem. 1995, 1925-1937.
Abstract
|
Sucrose (Solid-State Structure) |
Crystal structure, space group P21/b, Z=2, a=10.86, b=8.71, c=7.76A,
β=102.95
Image Notes |
0-1 |
4*4*4 Unit cells, 128 molecules viewed in the direction of the a-axis (upper left, the c-axis points to the right, the b-axis: up), b-axis (upper right, a-axis: right, c-axis: up), c-axis (lower left, b-axis: right, a-axis: up), and perpendicular to the 2-fold screw axis (lower right, b-axis: right, a-axis: up) |
a1-6 |
1*4*1 Unit cells, 8 molecules viewed perpendicular to the 2-fold screw axis |
c1-3 |
Single unit cell with 2 molecules viewed almost along the b-axis (the a-axis points to the right, the c-axis up) |
Image Notes |
x1-3 |
4*4*4 Unit cells, 128 molecules (32 visible) viewed in the direction of the a-axis (c-axis: right, the b-axis: up) |
y1-3 |
4*4*4 Unit cells, 128 molecules (32 visible) viewed in the direction of the b-axis (a-axis: right, the c-axis: up) |
z1-3 |
4*4*4 Unit cells, 128 molecules (32 visible) viewed in the direction of the c-axis (b-axis: right, the a-axis: up) |
|
Sucrose (Solution Structure) |
Solution-Structure and First Hydration Shell, Molecular Dynamics Analysis
(500ps including 571 water molecules, periodic boundary conditions of
truncated octahedron)
Image Notes |
box1-4 |
Simulation system for the molecular dynamics analysis:
sucrose surrounded by 571 water molecules (periodic boundary conditions
of truncated octahedron, boxsize of the system approx. 32.9Ang). |
p1,2 |
Probability density of water oxygen atoms (left)
and protons (right) around a mean sucrose solution geometry. The
distributions were projected into a plane bisecting the molecule, red colors
indicate high, blue colors average, and violet decreased probability
densities. |
po |
Probability density of water oxygens (vide supra) |
ph |
Probability density of water protons (vide supra) |
c1 |
Iso-contours of the probability density of water oxygen atoms (left)
and protons (right) around a mean sucrose solution geometry (at arbitrary
levels an increasing density is indicated by different colors in the
order of pink < blue < green < yellow < red). |
co |
Probability density of water oxygens (vide supra) |
ch |
Probability density of water protons (vide supra) |
h,o |
Foggy representations of the probability density of water
oxygen atoms and protons around sucrose in solution. |
water1-6 |
Least-squares best-fit first hydration shell of sucrose in
aqueous solution. Fitting of the water shell geometries was performed relative
to the density distributions (vide supra), the best snapshot configuration
("frozen molecular image") was selected and all 12 water molecules hydrogen
bonded to sucrose are shown. In the pictures water3 and 4, the molecular
lipophilicity pattern (MLP, yellow-brown:
hydrophobic, blue: hydrophilic areas) of sucrose is
additionally projected onto the corresponding molecular surface.
|
For details see:
Molecular Modeling of Saccharides, Part VII.
The Conformation of Sucrose in Water: a Molecular Dynamics Approach.
S. Immel and F. W. Lichtenthaler, Liebigs Ann. Chem. 1995, 1925-1937.
Abstract
|