| This Release | UMLS-Similarity-1.47 | [Download] [Browse] | 14 Sep 2016 | ||||
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| UMLS::Similarity | A suite of Perl modules that implement a number of semantic similarity measures in order to calculate the similarity between two concepts in the UMLS. The measures use the UMLS-Interface module to acc | 1.47 | |
| UMLS::Similarity::ErrorHandler | Provides the error handling of the configuration files for the measures in the UMLS-Similarity package. | ||
| UMLS::Similarity::batet | Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Batet, et al. (2011) | 0.07 | |
| UMLS::Similarity::cdist | Perl module for computing semantic relatedness of concepts in the UMLS by simple edge counting proposed by Rada, et. al. (1989). | 0.07 | |
| UMLS::Similarity::cmatch | Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Maedche and Staab (2001). | 0.07 | |
| UMLS::Similarity::faith | Perl module for computing the semantic relatednessof concepts in the Unified Medical Language System (UMLS) using the method described by Pirro and Euzenat (2010). | 0.07 | |
| UMLS::Similarity::jcn | Perl module for computing the semantic relatednessof concepts in the Unified Medical Language System (UMLS) using the method described by Jiang and Conrath (1997). | 0.09 | |
| UMLS::Similarity::lch | Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Leacock and Chodorow (1998). | 0.07 | |
| UMLS::Similarity::lesk | Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Banerjee and Pedersen (2002). | 0.07 | |
| UMLS::Similarity::lin | Perl module for computing the semantic relatednessof concepts in the Unified Medical Language System (UMLS) using the method described by Lin (1997). | 0.07 | |
| UMLS::Similarity::nam | Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Nguyen and Al-Mubaid (2006) | 0.07 | |
| UMLS::Similarity::path | Perl module for computing semantic similarity of concepts in the UMLS by simple edge counting. | 0.07 | |
| UMLS::Similarity::pks | Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Pekar and Staab (2002) | 0.07 | |
| UMLS::Similarity::random | Perl module for computing a random baseline by assigning a random number between zero and one as the similarity score. | 0.05 | |
| UMLS::Similarity::res | Perl module for computing the semantic relatednessof concepts in the Unified Medical Language System (UMLS) using the method described by Resnik (1995). | 0.07 | |
| UMLS::Similarity::sanchez | Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Sanchez, et al. (2012). | 0.07 | |
| UMLS::Similarity::upath | Perl module for computing semantic similarity of concepts in the UMLS by simple edge counting regardless of the direction | 0.07 | |
| UMLS::Similarity::vector | Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Patwardhan and Pedersen (2006). | 0.11 | |
| UMLS::Similarity::wup | Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Wu and Palmer (1994). | 0.07 | |
| UMLS::Similarity::zhong | Perl module for computing semantic relatedness of concepts in the Unified Medical Language System (UMLS) using the method described by Zhong, et al 2002. | 0.07 |
| create-icfrequency.pl | This program sums the frequency counts of the CUIs from a specified set of sources in plain text. |
| create-icpropagation.pl | This program determines the probability of the CUIs in a specified set of sources and relations. |
| query-umls-similarity-webinterface.pl | This program returns a semantic similarity score between two concepts. |
| sim2r.pl | This program converts a series of umls-similarity output to R format in order to run the SignificanceTesting.r program. |
| spearmans.pl | This program calculates Spearman's Rank Correlation between two datasets. |
| umls-similarity.pl | This program returns a semantic similarity score between two concepts. |
| umls_similarity.cgi | a CGI script implementing a portion of a web interface for UMLS::Similarity |
| umls_similarity_server.pl | [Web] The backend UMLS::Similarity server for the Web Interface |
| vector-input.pl | This program builds the term index file and co-occrrence matrix for umls-similarity.pl to calculate the vector relatedness. |
| wps.cgi | a CGI script implementing the obtaining of the concept definitions for the web interface. |
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samples/README web/README web/docs/faq.html web/docs/index.html |
web/docs/instructions.html web/docs/relatedness_measures.html web/docs/similarity_measures.html web/index.html |
